GTModelBeata2015 2020-07-02 11:41
Independent Section Contains tests that are independent of the class of modeled organism, a model's complexity or types of identifiers that are used to describe its components. Parameterization or initialization of the network is not required. See readme for more details.

Consistency

Metabolite Connectivity
100.0%

Disconnected metabolites are not part of any reaction in the model. They are most likely left-over from the reconstruction process, but may also point to network and knowledge gaps. Implementation: Check for any metabolites of the cobra.Model object with emtpy reaction attribute.

A total of 0 (0.00%) metabolites are not associated with any reaction of the model:



Annotation - Metabolites


Annotation - Reactions


Annotation - Genes


Annotation - SBO Terms





Total Score
88%
Score per Category
0%10%20%30%40%50%60%70%80%90%100%scoreconsistencyannotation_metannotation_rxnannotation_geneannotation_sbosection
Specific Section Covers general statistics and specific aspects of a metabolic network that are not universally applicable. See readme for more details.
SBML
Basic Information
Metabolite Information
Reaction Information
Gene-Protein-Reaction (GPR) Associations
Biomass
Energy Metabolism
Network Topology
Matrix Conditioning
Experimental Data Comparison
Misc. Tests
Environment